Workflow

Processes

Actions Process Description
Processor get_gene_coordinate
Processor sub_data
Processor eda
Processor visualization
Processor Get_Data Download data from Gene Expression Omnibus (GEO).
Processor data_correction
Processor find_dmrs

Inputs

Actions Name Description Example Data
genes Names of genes related to epilepsy and stroke diseases genes.Rda
geo_id GEO accession number GSE37579
groups List of sample groups. control, treatent

Outputs

Actions Name Description Example Data
dmrs_plots Document containing graphic charts of DMRs. dmrs_plots.pdf
stdout
error
eda_plots Document with graphic charts from EDA. eda_plots.pdf
pca_fit_plot Document containg PCA grachic chart of corrected data. pca_fit.pdf
dmrs_table CSV file containing DMRs found. dmrs.csv

Executable Workflow

Download workflow specification for Taverna System (T2Flow format for Taverna 2.5):

Workflow rendering for Taverna workflow system.

Workflow Runs

Workflow Run Time
08:18:57.726 03-10-2017 (Started)
08:21:17.144 03-10-2017 (End)